Structures of Two Repeats of Spectrin Suggest Models of Flexibility

Notes on the 1999 Cell paper describing crystal structures of spectrin repeats and introducing two models for spectrin’s flexibility: conformational rearrangement and linker bending. Provides insights into spectrin’s role as a flexible cytoskeletal scaffold.

Structures of Two Repeats of Spectrin Suggest Models of Flexibility

Notes on the 1999 Cell paper describing crystal structures of spectrin repeats and introducing two models for spectrin’s flexibility: conformational rearrangement and linker bending. Provides insights into spectrin’s role as a flexible cytoskeletal scaffold.

SOCKET: A Program for Identifying and Analyzing Coiled-Coil Motifs within Protein Structures

Notes on the 2001 JMB paper introducing SOCKET, a computational tool that identifies coiled-coil motifs based on structural features rather than sequence patterns. Highlights the diversity of coiled-coil structures, the central role of knobs-into-holes packing, and applications in structural analysis and design.

SOCKET: A Program for Identifying and Analyzing Coiled-Coil Motifs within Protein Structures

Notes on the 2001 JMB paper introducing SOCKET, a computational tool that identifies coiled-coil motifs based on structural features rather than sequence patterns. Highlights the diversity of coiled-coil structures, the central role of knobs-into-holes packing, and applications in structural analysis and design.

Structure of the Autoinhibited CaMKII Kinase Domain and SAXS Analysis of the Holoenzyme

Notes on a 2005 Cell paper revealing the crystal structure of autoinhibited CaMKII kinase domain and small-angle X-ray scattering (SAXS) analysis of the full holoenzyme, uncovering mechanisms for tight autoinhibition and explaining frequency-dependent activation.

Structure of the Autoinhibited CaMKII Kinase Domain and SAXS Analysis of the Holoenzyme

Notes on a 2005 Cell paper revealing the crystal structure of autoinhibited CaMKII kinase domain and small-angle X-ray scattering (SAXS) analysis of the full holoenzyme, uncovering mechanisms for tight autoinhibition and explaining frequency-dependent activation.

Predicting Coiled-Coil from Protein Sequences: A 1991 Science Classic

Notes on the foundational 1991 Science paper introducing a sequence-based method to predict coiled-coil domains. This paper outlines a statistical framework using heptad repeat patterns, Gaussian distributions, and sliding windows, uncovering over 200 proteins in GenBank with potential coiled-coil motifs.

Predicting Coiled-Coil from Protein Sequences: A 1991 Science Classic

Notes on the foundational 1991 Science paper introducing a sequence-based method to predict coiled-coil domains. This paper outlines a statistical framework using heptad repeat patterns, Gaussian distributions, and sliding windows, uncovering over 200 proteins in GenBank with potential coiled-coil motifs.

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